PH01000444G0100's details annotation
1.Annotation
ICBR annotation: PPR repeat domain containing protein, putative, expressed
Blast result AT5G61400 : 1.10E-98
Blast annotation: Pentatricopeptide repeat (PPR) superfamily protein
2.Location
Scaffold: PH01000444
Strand: -
| Region | Start | End |
| gene | 61346 | 64391 |
| mRNA | 61346 | 64391 |
| exon | 61346 | 64391 |
| CDS | 61537 | 63084 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01535.19 | PPR | 23 | 50 |
| PF13041.5 | PPR_2 | 53 | 101 |
| PF13041.5 | PPR_2 | 123 | 171 |
| PF13041.5 | PPR_2 | 193 | 242 |
| PF12854.6 | PPR_1 | 260 | 291 |
| PF13041.5 | PPR_2 | 298 | 347 |
| PF12854.6 | PPR_1 | 364 | 393 |
| PF13041.5 | PPR_2 | 422 | 469 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.