PH01000444G0400's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G73960 : 1.00E-174
Blast annotation: TBP-associated factor 2
2.Location
Scaffold: PH01000444
Strand: -
| Region | Start | End |
| gene | 252131 | 262801 |
| mRNA | 252131 | 262801 |
| exon | 252131 | 253992 |
| exon | 254919 | 255102 |
| exon | 255177 | 255342 |
| exon | 256570 | 256659 |
| exon | 256886 | 256972 |
| exon | 258124 | 258166 |
| exon | 258280 | 258359 |
| exon | 259318 | 259443 |
| exon | 260291 | 260378 |
| exon | 260452 | 260787 |
| exon | 260886 | 260983 |
| exon | 261434 | 261490 |
| exon | 261984 | 262109 |
| exon | 262484 | 262801 |
| CDS | 252993 | 253992 |
| CDS | 254919 | 255102 |
| CDS | 255177 | 255342 |
| CDS | 256570 | 256659 |
| CDS | 256886 | 256972 |
| CDS | 258124 | 258166 |
| CDS | 258280 | 258359 |
| CDS | 259318 | 259443 |
| CDS | 260291 | 260378 |
| CDS | 260452 | 260787 |
| CDS | 260886 | 260983 |
| CDS | 261434 | 261490 |
| CDS | 261984 | 262109 |
| CDS | 262484 | 262534 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001674 | PHD Transcription_Regulator(from iTAK) sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity, pentose-phosphate shunt, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.