PH01000448G0550's details annotation
1.Annotation
ICBR annotation: extra-large G-protein-related, putative, expressed
Blast result AT3G61670 : 2.10E-46
Blast annotation: Protein of unknown function (DUF3133)
2.Location
Scaffold: PH01000448
Strand: -
| Region | Start | End |
| gene | 408823 | 417046 |
| mRNA | 408823 | 417046 |
| exon | 408823 | 410277 |
| exon | 410336 | 411124 |
| exon | 411544 | 411606 |
| exon | 411809 | 411881 |
| exon | 412216 | 412439 |
| exon | 412518 | 412578 |
| exon | 412612 | 412674 |
| exon | 414153 | 417046 |
| CDS | 409693 | 410277 |
| CDS | 410336 | 411124 |
| CDS | 411544 | 411606 |
| CDS | 411809 | 411881 |
| CDS | 412216 | 412439 |
| CDS | 412518 | 412578 |
| CDS | 412612 | 412674 |
| CDS | 414153 | 416161 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF11331.7 | zinc_ribbon_12 | 236 | 278 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.