PH01000450G0210's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G53645 : 1.50E-63
Blast annotation: hydroxyproline-rich glycoprotein family protein
2.Location
Scaffold: PH01000450
Strand: +
| Region | Start | End |
| gene | 162345 | 166062 |
| mRNA | 162345 | 166062 |
| exon | 162345 | 163390 |
| exon | 163487 | 163630 |
| exon | 164766 | 164951 |
| exon | 165840 | 166062 |
| CDS | 162968 | 163390 |
| CDS | 163487 | 163630 |
| CDS | 164766 | 164951 |
| CDS | 165840 | 165920 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001685 | ARID Transcription_Regulator(from iTAK) NAD+ ADP-ribosyltransferase activity, |
| coexpression network | CFinderM001689 | Ribosome translation, Jumonji Transcription_Regulator(from iTAK) structural constituent of ribosome, Ribosome small ribosomal subunit, intracellular, |
| coexpression network | CFinderM001828 | ARID Transcription_Regulator(from iTAK) ion transport, intracellular, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.