PH01000450G0480's details annotation
1.Annotation
ICBR annotation: OsSPL11 - SBP-box gene family member, expressed
Blast result AT5G43270 : 5.30E-32
Blast annotation: squamosa promoter binding protein-like 2
2.Location
Scaffold: PH01000450
Strand: +
| Region | Start | End |
| gene | 319332 | 324328 |
| mRNA | 319332 | 324328 |
| exon | 319332 | 319813 |
| exon | 320547 | 320707 |
| exon | 321253 | 321483 |
| exon | 322136 | 322304 |
| exon | 322498 | 322686 |
| exon | 323580 | 323694 |
| exon | 323749 | 324328 |
| CDS | 319524 | 319813 |
| CDS | 320547 | 320707 |
| CDS | 321253 | 321483 |
| CDS | 322136 | 322304 |
| CDS | 322498 | 322686 |
| CDS | 323580 | 323694 |
| CDS | 323749 | 324165 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | phe-miR156e | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | SBP |
| Transcription_Regulator(from PlantTFDB) | SBP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03110.13 | SBP | 51 | 124 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005634 | nucleus |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.