PH01000450G0840's details annotation
1.Annotation
ICBR annotation: DNA binding protein, putative, expressed
Blast result AT2G19160 : 2.50E-63
Blast annotation: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
2.Location
Scaffold: PH01000450
Strand: +
| Region | Start | End |
| gene | 523423 | 534407 |
| mRNA | 523423 | 534407 |
| exon | 523423 | 523574 |
| exon | 524084 | 524172 |
| exon | 524277 | 524387 |
| exon | 525657 | 525826 |
| exon | 528048 | 528398 |
| exon | 528584 | 529059 |
| exon | 529521 | 529619 |
| exon | 530265 | 530365 |
| exon | 530448 | 530519 |
| exon | 531206 | 531661 |
| exon | 532318 | 532408 |
| exon | 532593 | 532673 |
| exon | 533340 | 533462 |
| exon | 533579 | 533617 |
| exon | 533881 | 534407 |
| CDS | 523572 | 523574 |
| CDS | 524084 | 524172 |
| CDS | 524277 | 524387 |
| CDS | 525657 | 525826 |
| CDS | 528048 | 528398 |
| CDS | 528584 | 529059 |
| CDS | 529521 | 529619 |
| CDS | 530265 | 530365 |
| CDS | 530448 | 530519 |
| CDS | 531206 | 531661 |
| CDS | 532318 | 532408 |
| CDS | 532593 | 532673 |
| CDS | 533340 | 533462 |
| CDS | 533579 | 533617 |
| CDS | 533881 | 534015 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000180 | transmembrane transport, integral to membrane, CAMK_AMPK (from iTAK) GH100 Glycoside_Hydrolases GH32 Glycoside_Hydrolases Golgi membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02485.20 | Branch | 379 | 494 |
| PF02485.20 | Branch | 642 | 740 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008375 | acetylglucosaminyltransferase activity |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.