Annotation of co-expression genes

PH01000451G0150's details annotation

1.Annotation

ICBR annotation: NBS-LRR disease resistance protein, putative, expressed

Blast result AT3G14470 : 3.80E-73
Blast annotation: NB-ARC domain-containing disease resistance protein

2.Location

Scaffold: PH01000451
Strand: -

RegionStartEnd
gene8782895424
mRNA8782895424
exon8782890786
exon9123591388
exon9165591746
exon9188195424
CDS8787190786
CDS9123591388
CDS9165591746
CDS9188192024

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000492SCY1_SCYL1 (from iTAK)
RLK-Pelle_RLCK-IXb (from iTAK)
SWI/SNF-BAF60b Transcription_Regulator(from iTAK)
protein binding,
protein phosphatase type 2A complex,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00931.21NB-ARC202466

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0006952defense response
GO:0043531ADP binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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