PH01000451G0790's details annotation
1.Annotation
ICBR annotation: small G protein family protein, putative, expressed
Blast result AT5G61530 : 3.00E-119
Blast annotation: small G protein family protein / RhoGAP family protein
2.Location
Scaffold: PH01000451
Strand: +
| Region | Start | End |
| gene | 630526 | 637127 |
| mRNA | 630526 | 637127 |
| exon | 630526 | 631702 |
| exon | 632993 | 633074 |
| exon | 633361 | 633605 |
| exon | 634084 | 634146 |
| exon | 634241 | 634259 |
| exon | 634545 | 634643 |
| exon | 634727 | 634804 |
| exon | 635264 | 635508 |
| exon | 635928 | 636084 |
| exon | 636657 | 637127 |
| CDS | 631598 | 631702 |
| CDS | 632993 | 633074 |
| CDS | 633361 | 633605 |
| CDS | 634084 | 634146 |
| CDS | 634241 | 634259 |
| CDS | 634545 | 634643 |
| CDS | 634727 | 634804 |
| CDS | 635264 | 635508 |
| CDS | 635928 | 636084 |
| CDS | 636657 | 636814 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00620.26 | RhoGAP | 191 | 332 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005622 | intracellular |
| GO:0007165 | signal transduction |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.