PH01000452G0310's details annotation
1.Annotation
ICBR annotation: terpene synthase, putative, expressed
Blast result AT5G23960 : 1.90E-39
Blast annotation: terpene synthase 21
2.Location
Scaffold: PH01000452
Strand: +
| Region | Start | End |
| gene | 244830 | 260897 |
| mRNA | 244830 | 260897 |
| exon | 244830 | 245427 |
| exon | 250564 | 250930 |
| exon | 251061 | 251279 |
| exon | 253017 | 253100 |
| exon | 256017 | 256151 |
| exon | 256543 | 256864 |
| exon | 257042 | 257337 |
| exon | 258810 | 258945 |
| exon | 259610 | 259861 |
| exon | 260236 | 260897 |
| CDS | 245196 | 245427 |
| CDS | 250564 | 250930 |
| CDS | 251061 | 251279 |
| CDS | 253017 | 253100 |
| CDS | 256017 | 256151 |
| CDS | 256543 | 256864 |
| CDS | 257042 | 257337 |
| CDS | 258810 | 258945 |
| CDS | 259610 | 259861 |
| CDS | 260236 | 260532 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01397.20 | Terpene_synth | 78 | 146 |
| PF03936.15 | Terpene_synth_C | 177 | 279 |
| PF03936.15 | Terpene_synth_C | 551 | 721 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000287 | magnesium ion binding |
| GO:0008152 | metabolic process |
| GO:0010333 | terpene synthase activity |
| GO:0016829 | lyase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.