Annotation of co-expression genes

PH01000456G0930's details annotation

1.Annotation

ICBR annotation: RNA recognition motif containing protein, putative, expressed

Blast result AT5G18810 : 5.40E-36
Blast annotation: SC35-like splicing factor 28

2.Location

Scaffold: PH01000456
Strand: -

RegionStartEnd
gene622406626455
mRNA622406626455
exon622406622801
exon623054623218
exon623869623946
exon626193626455
CDS622774622801
CDS623054623218
CDS623869623946
CDS626193626392

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000839TUB Transcription_Regulator(from iTAK)
hydroxymethylglutaryl-CoA lyase activity,
Spliceosome
coexpression networkCFinderM001207regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
regulation of transcription, DNA-dependent,
WRKY Transcription_Regulator(from PlantTFDB)
hydroxymethylglutaryl-CoA lyase activity,
Spliceosome

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00076.21RRM_157126

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
SpliceosomeFUS-interacting serine-arginine-rich protein 1ko03041K12900

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003676nucleic acid binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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