PH01000456G0940's details annotation
1.Annotation
ICBR annotation: MYB family transcription factor, putative, expressed
Blast result AT2G03500 : 8.00E-39
Blast annotation: Homeodomain-like superfamily protein
2.Location
Scaffold: PH01000456
Strand: +
| Region | Start | End |
| gene | 628185 | 629881 |
| mRNA | 628185 | 629881 |
| exon | 628185 | 628504 |
| exon | 628619 | 628770 |
| exon | 628912 | 629317 |
| exon | 629417 | 629493 |
| exon | 629601 | 629881 |
| CDS | 628303 | 628504 |
| CDS | 628619 | 628770 |
| CDS | 628912 | 629317 |
| CDS | 629417 | 629493 |
| CDS | 629601 | 629828 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000801 | arsenite_transport arsenite transmembrane transporter activity, galactose metabolic process, G2-like Transcription_Regulator(from PlantTFDB) GARP-G2-like Transcription_Regulator(from iTAK) UDP-glucose 4-epimerase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | GARP-G2-like |
| Transcription_Regulator(from PlantTFDB) | G2-like |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00249.30 | Myb_DNA-binding | 231 | 282 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003682 | chromatin binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.