PH01000458G0440's details annotation
1.Annotation
ICBR annotation: zinc finger, C3HC4 type domain containing protein, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000458
Strand: +
| Region | Start | End |
| gene | 299587 | 302232 |
| mRNA | 299587 | 302232 |
| exon | 299587 | 299948 |
| exon | 300047 | 301321 |
| exon | 301448 | 302232 |
| CDS | 299789 | 299948 |
| CDS | 300047 | 301321 |
| CDS | 301448 | 302115 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000508 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis Tropane,_piperidine_and_pyridine_alkaloid_biosynthesis CAMK_CDPK (from iTAK) Novobiocin_biosynthesis Isoquinoline_alkaloid_biosynthesis Tyrosine_metabolism Ubiquinone_and_other_terpenoid-quinone_biosynthesis Cysteine_and_methionine_metabolism Phenylalanine_metabolism cellular amino acid metabolic process, |
| coexpression network | CFinderM001184 | CAMK_CDPK (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.