PH01000458G0750's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G16280 : 1.50E-45
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein
2.Location
Scaffold: PH01000458
Strand: -
| Region | Start | End |
| gene | 533555 | 541497 |
| mRNA | 533555 | 541497 |
| exon | 533555 | 534538 |
| exon | 534720 | 534806 |
| exon | 535242 | 535392 |
| exon | 535631 | 535711 |
| exon | 536287 | 536345 |
| exon | 536980 | 537042 |
| exon | 537083 | 537180 |
| exon | 539843 | 539974 |
| exon | 540632 | 540731 |
| exon | 540846 | 540940 |
| exon | 541060 | 541497 |
| CDS | 534515 | 534538 |
| CDS | 534720 | 534806 |
| CDS | 535242 | 535392 |
| CDS | 535631 | 535711 |
| CDS | 536287 | 536345 |
| CDS | 536980 | 537042 |
| CDS | 537083 | 537180 |
| CDS | 539843 | 539974 |
| CDS | 540632 | 540731 |
| CDS | 540846 | 540940 |
| CDS | 541060 | 541219 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12739.6 | TRAPPC-Trs85 | 250 | 342 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.