PH01000459G0010's details annotation
1.Annotation
ICBR annotation: ACT domain containing protein, expressed
Blast result AT2G31810 : 5.00E-161
Blast annotation: ACT domain-containing small subunit of acetolactate synthase protein
2.Location
Scaffold: PH01000459
Strand: +
| Region | Start | End |
| gene | 19374 | 33122 |
| mRNA | 19374 | 33122 |
| exon | 19374 | 20157 |
| exon | 23134 | 23217 |
| exon | 23363 | 23431 |
| exon | 23532 | 23615 |
| exon | 23697 | 23855 |
| exon | 24827 | 24913 |
| exon | 25332 | 25418 |
| exon | 25720 | 25824 |
| exon | 25910 | 26032 |
| exon | 26130 | 26282 |
| exon | 27154 | 27219 |
| exon | 30076 | 30215 |
| exon | 30831 | 30996 |
| exon | 31064 | 31289 |
| exon | 31381 | 31616 |
| exon | 32027 | 32398 |
| exon | 32561 | 33122 |
| CDS | 19924 | 20157 |
| CDS | 23134 | 23217 |
| CDS | 23363 | 23431 |
| CDS | 23532 | 23615 |
| CDS | 23697 | 23855 |
| CDS | 24827 | 24913 |
| CDS | 25332 | 25418 |
| CDS | 25720 | 25824 |
| CDS | 25910 | 26032 |
| CDS | 26130 | 26282 |
| CDS | 27154 | 27219 |
| CDS | 30076 | 30215 |
| CDS | 30831 | 30996 |
| CDS | 31064 | 31289 |
| CDS | 31381 | 31616 |
| CDS | 32027 | 32398 |
| CDS | 32561 | 33073 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13710.5 | ACT_5 | 20 | 79 |
| PF10369.8 | ALS_ss_C | 90 | 162 |
| PF13710.5 | ACT_5 | 283 | 345 |
| PF10369.8 | ALS_ss_C | 356 | 418 |
| PF13359.5 | DDE_Tnp_4 | 525 | 666 |
| PF12776.6 | Myb_DNA-bind_3 | 701 | 794 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| 297 Valine, leucine and isoleucine biosynthesis | acetolactate synthase I/III small subunit [EC:2.2.1.6] | K01653 | |
| Pantothenate and CoA biosynthesis | acetolactate synthase I/III small subunit [EC:2.2.1.6] | ko00770 | K01653 |
| Butanoate metabolism | acetolactate synthase I/III small subunit [EC:2.2.1.6] | ko00650 | K01653 |
| C5-Branched dibasic acid metabolism | acetolactate synthase I/III small subunit [EC:2.2.1.6] | ko00660 | K01653 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003984 | acetolactate synthase activity |
| GO:0009082 | branched-chain amino acid biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.