PH01000459G0310's details annotation
1.Annotation
ICBR annotation: CCT/B-box zinc finger protein, putative, expressed
Blast result AT5G57660 : 1.10E-58
Blast annotation: CONSTANS-like 5
2.Location
Scaffold: PH01000459
Strand: +
| Region | Start | End |
| gene | 248155 | 250818 |
| mRNA | 248155 | 250818 |
| exon | 248155 | 249726 |
| exon | 249824 | 250818 |
| CDS | 249076 | 249726 |
| CDS | 249824 | 250153 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | C2C2-CO-like |
| Transcription_Regulator(from PlantTFDB) | CO-like |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00643.23 | zf-B_box | 20 | 56 |
| PF00643.23 | zf-B_box | 59 | 104 |
| PF06203.13 | CCT | 250 | 292 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0005622 | intracellular |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.