Annotation of co-expression genes

PH01000459G0330's details annotation

1.Annotation

ICBR annotation: splicing factor, arginine/serine-rich 7, putative, expressed

Blast result AT2G24590 : 3.10E-38
Blast annotation: RNA recognition motif and CCHC-type zinc finger domains containing protein

2.Location

Scaffold: PH01000459
Strand: -

RegionStartEnd
gene258896264612
mRNA258896264612
exon258896260392
exon260995261235
exon262506262594
exon263761264612
CDS260182260392
CDS260995261235
CDS262506262594
CDS263761263849

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00076.21RRM_1461
PF00098.22zf-CCHC87102

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Spliceosomesplicing factor, arginine/serine-rich 7ko03041K12896

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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