PH01000459G0790's details annotation
1.Annotation
ICBR annotation: CPuORF9 - conserved peptide uORF-containing transcript, expressed
Blast result AT3G25570 : 6.00E-102
Blast annotation: Adenosylmethionine decarboxylase family protein
2.Location
Scaffold: PH01000459
Strand: +
| Region | Start | End |
| gene | 556134 | 559080 |
| mRNA | 556134 | 559080 |
| exon | 556134 | 559080 |
| CDS | 557742 | 558941 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01536.15 | SAM_decarbox | 16 | 342 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Cysteine and methionine metabolism | S-adenosylmethionine decarboxylase [EC:4.1.1.50] | ko00270 | K01611 |
| Arginine and proline metabolism | S-adenosylmethionine decarboxylase [EC:4.1.1.50] | ko00330 | K01611 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004014 | adenosylmethionine decarboxylase activity |
| GO:0006597 | spermine biosynthetic process |
| GO:0008295 | spermidine biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.