PH01000459G0800's details annotation
1.Annotation
ICBR annotation: SET domain containing protein
Blast result AT4G30860 : 4.60E-62
Blast annotation: SET domain group 4
2.Location
Scaffold: PH01000459
Strand: -
| Region | Start | End |
| gene | 559896 | 566079 |
| mRNA | 559896 | 566079 |
| exon | 559896 | 560869 |
| exon | 561962 | 562042 |
| exon | 562141 | 562312 |
| exon | 563196 | 563274 |
| exon | 563741 | 566079 |
| CDS | 560521 | 560869 |
| CDS | 561962 | 562042 |
| CDS | 562141 | 562312 |
| CDS | 563196 | 563274 |
| CDS | 563741 | 563878 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | SET |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00856.27 | SET | 51 | 156 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.