PH01000460G0520's details annotation
1.Annotation
ICBR annotation: RING finger protein, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000460
Strand: -
| Region | Start | End |
| gene | 336592 | 337640 |
| mRNA | 336592 | 337640 |
| exon | 336592 | 337640 |
| CDS | 336684 | 337127 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000130 | GH36 Glycoside_Hydrolases RNA_transport |
| coexpression network | CFinderM000148 | RLK-Pelle_LRR-VIII-1 (from iTAK) RLK-Pelle_WAK_LRK10L-1 (from iTAK) protein phosphorylation, C2H2 Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13639.5 | zf-RING_2 | 60 | 101 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.