PH01000460G0850's details annotation
1.Annotation
ICBR annotation: sulfate transporter 4.1, chloroplast precursor, putative, expressed
Blast result AT5G13550 : 4.00E-116
Blast annotation: sulfate transporter 4.1
2.Location
Scaffold: PH01000460
Strand: -
| Region | Start | End |
| gene | 555339 | 565403 |
| mRNA | 555339 | 565403 |
| exon | 555339 | 555501 |
| exon | 556233 | 556360 |
| exon | 556501 | 556561 |
| exon | 557573 | 557760 |
| exon | 559021 | 559033 |
| exon | 559220 | 559285 |
| exon | 559367 | 559474 |
| exon | 560222 | 560329 |
| exon | 560437 | 560502 |
| exon | 561201 | 561342 |
| exon | 562630 | 562831 |
| exon | 562938 | 562986 |
| exon | 564113 | 564427 |
| exon | 565202 | 565403 |
| CDS | 555445 | 555501 |
| CDS | 556233 | 556360 |
| CDS | 556501 | 556561 |
| CDS | 557573 | 557760 |
| CDS | 559021 | 559033 |
| CDS | 559220 | 559285 |
| CDS | 559367 | 559474 |
| CDS | 560222 | 560329 |
| CDS | 560437 | 560502 |
| CDS | 561201 | 561342 |
| CDS | 562630 | 562831 |
| CDS | 562938 | 562986 |
| CDS | 564113 | 564427 |
| CDS | 565202 | 565204 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00916.19 | Sulfate_transp | 89 | 353 |
| PF00916.19 | Sulfate_transp | 419 | 498 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008271 | secondary active sulfate transmembrane transporter activity |
| GO:0008272 | sulfate transport |
| GO:0015116 | sulfate transmembrane transporter activity |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.