Annotation of co-expression genes

PH01000461G0040's details annotation

1.Annotation

ICBR annotation: mannosyl-oligosaccharide glucosidase, putative, expressed

Blast result AT1G67490 : 3.00E-179
Blast annotation: glucosidase 1

2.Location

Scaffold: PH01000461
Strand: -

RegionStartEnd
gene1327521655
mRNA1327521655
exon1327513365
exon1343613486
exon1358913738
exon1552215601
exon1610716180
exon1627616383
exon1651516636
exon1708117188
exon1756117643
exon1790017996
exon1814718215
exon1847018538
exon1865118737
exon1886819042
exon1928919540
exon1991719990
exon2064621655
CDS1334213365
CDS1343613486
CDS1358913738
CDS1552215601
CDS1610716180
CDS1627616383
CDS1651516636
CDS1708117188
CDS1756117643
CDS1790017996
CDS1814718215
CDS1847018538
CDS1865118737
CDS1886819042
CDS1928919540
CDS1991719990
CDS2064620831

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF16923.4Glyco_hydro_63N71258
PF03200.15Glyco_hydro_63336529

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
N-Glycan biosynthesismannosyl-oligosaccharide glucosidase [EC:3.2.1.106]ko00510K01228
Protein processing in endoplasmic reticulummannosyl-oligosaccharide glucosidase [EC:3.2.1.106]ko04141K01228

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0004573mannosyl-oligosaccharide glucosidase activity
GO:0009311oligosaccharide metabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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