Annotation of co-expression genes

PH01000462G0520's details annotation

1.Annotation

ICBR annotation: MYB family transcription factor, putative, expressed

Blast result AT5G47390 : 1.30E-39
Blast annotation: myb-like transcription factor family protein

2.Location

Scaffold: PH01000462
Strand: -

RegionStartEnd
gene365272370261
mRNA365272370261
exon365272365979
exon366193366401
exon367798367942
exon369079369153
exon369429369509
exon369979370261
CDS365347365979
CDS366193366401
CDS367798367942
CDS369079369153
CDS369429369509
CDS369979370245

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001537vacuolar proton-transporting V-type ATPase, V1 domain,
ATP hydrolysis coupled proton transport,
MYB_related Transcription_Regulator(from PlantTFDB)
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
MYB-related Transcription_Regulator(from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)MYB-related
Transcription_Regulator(from PlantTFDB)MYB_related

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00249.30Myb_DNA-binding192236

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0003682chromatin binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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