PH01000463G0050's details annotation
1.Annotation
ICBR annotation: vacuolar protein sorting-associated protein 26, putative, expressed
Blast result AT5G53530 : 7.20E-40
Blast annotation: vacuolar protein sorting 26A
2.Location
Scaffold: PH01000463
Strand: +
| Region | Start | End |
| gene | 27131 | 29323 |
| mRNA | 27131 | 29323 |
| exon | 27131 | 27637 |
| exon | 27742 | 27816 |
| exon | 27932 | 28004 |
| exon | 29091 | 29323 |
| CDS | 27431 | 27637 |
| CDS | 27742 | 27816 |
| CDS | 27932 | 28004 |
| CDS | 29091 | 29206 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03643.14 | Vps26 | 51 | 155 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0007034 | vacuolar transport |
| GO:0030904 | retromer complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.