Annotation of co-expression genes

PH01000465G0170's details annotation

1.Annotation

ICBR annotation: 6PF-2-K/Fru-2,6-P2ASE liver isozyme, putative, expressed

Blast result AT1G07110 : 1.00E-113
Blast annotation: fructose-2,6-bisphosphatase

2.Location

Scaffold: PH01000465
Strand: +

RegionStartEnd
gene138351145579
mRNA138351145579
exon138351138700
exon138781138841
exon139231139529
exon140288140317
exon140630140845
exon141680141820
exon142296142388
exon142922143020
exon143116143145
exon143420143473
exon143912143965
exon144035144112
exon145552145579
CDS138554138700
CDS138781138841
CDS139231139529
CDS140288140317
CDS140630140845
CDS141680141820
CDS142296142388
CDS142922143020
CDS143116143145
CDS143420143473
CDS143912143965
CDS144035144112
CDS145552145575

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00686.18CBM_203498
PF01591.176PF2K317432

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:00038736-phosphofructo-2-kinase activity
GO:0005524ATP binding
GO:0006000fructose metabolic process
GO:0006003fructose 2,6-bisphosphate metabolic process
GO:0030246carbohydrate binding
GO:2001070starch binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.