PH01000465G0850's details annotation
1.Annotation
ICBR annotation: 40S ribosomal protein S7, putative, expressed
Blast result AT1G48830 : 3.50E-82
Blast annotation: Ribosomal protein S7e family protein
2.Location
Scaffold: PH01000465
Strand: +
| Region | Start | End |
| gene | 579366 | 582440 |
| mRNA | 579366 | 582440 |
| exon | 579366 | 580337 |
| exon | 580470 | 580543 |
| exon | 580670 | 580793 |
| exon | 581582 | 581764 |
| exon | 582062 | 582440 |
| CDS | 580263 | 580337 |
| CDS | 580470 | 580543 |
| CDS | 580670 | 580793 |
| CDS | 581582 | 581764 |
| CDS | 582062 | 582184 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01251.17 | Ribosomal_S7e | 7 | 187 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | small subunit ribosomal protein S7e | ko03011 | K02993 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.