PH01000465G0860's details annotation
1.Annotation
ICBR annotation: malonyl CoA-acyl carrier protein transacylase, mitochondrial precursor, putative, expressed
Blast result AT2G30200 : 6.00E-129
Blast annotation: catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding
2.Location
Scaffold: PH01000465
Strand: -
| Region | Start | End |
| gene | 582593 | 590041 |
| mRNA | 582593 | 590041 |
| exon | 582593 | 583287 |
| exon | 583426 | 583512 |
| exon | 583590 | 583766 |
| exon | 584594 | 584674 |
| exon | 584750 | 584887 |
| exon | 584986 | 585034 |
| exon | 586926 | 587068 |
| exon | 587489 | 587555 |
| exon | 587791 | 587933 |
| exon | 588354 | 588420 |
| exon | 588562 | 588647 |
| exon | 589113 | 590041 |
| CDS | 583225 | 583287 |
| CDS | 583426 | 583512 |
| CDS | 583590 | 583766 |
| CDS | 584594 | 584674 |
| CDS | 584750 | 584887 |
| CDS | 584986 | 585034 |
| CDS | 586926 | 587068 |
| CDS | 587489 | 587555 |
| CDS | 587791 | 587933 |
| CDS | 588354 | 588420 |
| CDS | 588562 | 588647 |
| CDS | 589113 | 589325 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00698.20 | Acyl_transf_1 | 164 | 404 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Fatty acid biosynthesis | [acyl-carrier-protein] S-malonyltransferase[EC:2.3.1.39] | ko00061 | K00645 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0005515 | protein binding |
| GO:0008152 | metabolic process |
| GO:0016740 | transferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.