PH01000466G0340's details annotation
1.Annotation
ICBR annotation: OsMADS68 - MADS-box family gene with MIKC* type-box, expressed
Blast result AT1G18750 : 1.10E-67
Blast annotation: AGAMOUS-like 65
2.Location
Scaffold: PH01000466
Strand: -
| Region | Start | End |
| gene | 212382 | 216357 |
| mRNA | 212382 | 216357 |
| exon | 212382 | 212842 |
| exon | 213177 | 213540 |
| exon | 213718 | 213848 |
| exon | 213948 | 213998 |
| exon | 214208 | 214304 |
| exon | 214554 | 214615 |
| exon | 214717 | 214732 |
| exon | 214831 | 214895 |
| exon | 214993 | 215011 |
| exon | 215112 | 215171 |
| exon | 215615 | 216357 |
| CDS | 212783 | 212842 |
| CDS | 213177 | 213540 |
| CDS | 213718 | 213848 |
| CDS | 213948 | 213998 |
| CDS | 214208 | 214304 |
| CDS | 214554 | 214615 |
| CDS | 214717 | 214732 |
| CDS | 214831 | 214895 |
| CDS | 214993 | 215011 |
| CDS | 215112 | 215171 |
| CDS | 215615 | 215799 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | MADS-M-type |
| Transcription_Regulator(from PlantTFDB) | M-type_MADS |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00319.17 | SRF-TF | 11 | 54 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.