Annotation of co-expression genes

PH01000466G0500's details annotation

1.Annotation

ICBR annotation: kelch repeat protein, putative, expressed

Blast result AT5G18590 : 1.80E-86
Blast annotation: Galactose oxidase/kelch repeat superfamily protein

2.Location

Scaffold: PH01000466
Strand: -

RegionStartEnd
gene308781313727
mRNA308781313727
exon308781309073
exon309376309429
exon309884309904
exon310070310196
exon310448310587
exon310672310733
exon310843310909
exon311237311341
exon311452311529
exon311664311840
exon311918311996
exon312588313727
CDS308963309073
CDS309376309429
CDS309884309904
CDS310070310196
CDS310448310587
CDS310672310733
CDS310843310909
CDS311237311341
CDS311452311529
CDS311664311840
CDS311918311996
CDS312588312634

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13854.5Kelch_596131
PF13418.5Kelch_4207257
PF13418.5Kelch_4258296

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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