PH01000467G0180's details annotation
1.Annotation
ICBR annotation: OsFBL19 - F-box domain and LRR containing protein, expressed
Blast result AT1G47056 : 5.00E-111
Blast annotation: VIER F-box proteine 1
2.Location
Scaffold: PH01000467
Strand: -
| Region | Start | End |
| gene | 127152 | 133199 |
| mRNA | 127152 | 133199 |
| exon | 127152 | 129240 |
| exon | 130223 | 130298 |
| exon | 130367 | 133199 |
| CDS | 127695 | 129240 |
| CDS | 130223 | 130298 |
| CDS | 130367 | 130712 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05699.13 | Dimer_Tnp_hAT | 27 | 110 |
| PF12937.6 | F-box-like | 179 | 211 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0005515 | protein binding |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.