PH01000467G0940's details annotation
1.Annotation
ICBR annotation: suppressor of stem-loop protein 1, putative, expressed
Blast result AT1G05055 : 2.00E-120
Blast annotation: general transcription factor II H2
2.Location
Scaffold: PH01000467
Strand: -
| Region | Start | End |
| gene | 639942 | 645608 |
| mRNA | 639942 | 645608 |
| exon | 639942 | 640418 |
| exon | 640608 | 640640 |
| exon | 640862 | 641017 |
| exon | 641639 | 641872 |
| exon | 641952 | 642413 |
| exon | 644627 | 645608 |
| CDS | 640386 | 640418 |
| CDS | 640608 | 640640 |
| CDS | 640862 | 641017 |
| CDS | 641639 | 641872 |
| CDS | 641952 | 642413 |
| CDS | 644627 | 644947 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04056.13 | Ssl1 | 102 | 292 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Basal transcription factors | transcription initiation factor TFIIH subunit 2 | ko03022 | K03142 |
| Nucleotide excision repair | transcription initiation factor TFIIH subunit 2 | ko03420 | K03142 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000439 | core TFIIH complex |
| GO:0005515 | protein binding |
| GO:0006289 | nucleotide-excision repair |
| GO:0006351 | transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.