Annotation of co-expression genes

PH01000468G0130's details annotation

1.Annotation

ICBR annotation: thioredoxin, putative, expressed

Blast result AT1G08570 : 1.40E-80
Blast annotation: atypical CYS HIS rich thioredoxin 4

2.Location

Scaffold: PH01000468
Strand: +

RegionStartEnd
gene5993064116
mRNA5993064116
exon5993061555
exon6187462050
exon6215162315
exon6282263063
exon6316664116
CDS6132861555
CDS6187462050
CDS6215162315
CDS6282263063
CDS6316663238

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000448COPII vesicle coat,
Protein_processing_in_endoplasmic_reticulum
Protein_export
coexpression networkCFinderM000449glycerol ether metabolic process,
cell redox homeostasis,
coexpression networkCFinderM000862DBP Transcription_Regulator(from iTAK)
Golgi stack,
GPI-anchor transamidase complex,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00085.19Thioredoxin113180

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0006662glycerol ether metabolic process
GO:0009055electron carrier activity
GO:0015035protein disulfide oxidoreductase activity
GO:0045454cell redox homeostasis

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.