Annotation of co-expression genes

PH01000469G0150's details annotation

1.Annotation

ICBR annotation: valyl-tRNA synthetase, putative, expressed

Blast result AT1G14610 : 2.00E-108
Blast annotation: valyl-tRNA synthetase / valine--tRNA ligase (VALRS)

2.Location

Scaffold: PH01000469
Strand: +

RegionStartEnd
gene109892115185
mRNA109892115185
exon109892110314
exon110469110659
exon110774111176
exon111857112061
exon112466112683
exon112784112881
exon112989113088
exon113330113560
exon113607115185
CDS110192110314
CDS110469110659
CDS110774111176
CDS111857112061
CDS112466112683
CDS112784112881
CDS112989113088
CDS113330113560
CDS113607113750

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000125valyl-tRNA aminoacylation,
valine-tRNA ligase activity,
tRNA aminoacylation for protein translation,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00133.21tRNA-synt_140274
PF08264.12Anticodon_1308405

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0004812aminoacyl-tRNA ligase activity
GO:0004832valine-tRNA ligase activity
GO:0005524ATP binding
GO:0005737cytoplasm
GO:0006418tRNA aminoacylation for protein translation
GO:0006438valyl-tRNA aminoacylation

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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