Annotation of co-expression genes

PH01000469G0270's details annotation

1.Annotation

ICBR annotation: NLI interacting factor-like phosphatase, putative, expressed

Blast result AT2G33540 : 0.00E+00
Blast annotation: C-terminal domain phosphatase-like 3

2.Location

Scaffold: PH01000469
Strand: -

RegionStartEnd
gene207182212208
mRNA207182212208
exon207182207814
exon207903207993
exon208101208369
exon208459208605
exon208686209264
exon209549209779
exon209897210982
exon211079211139
exon211230211285
exon211361211499
exon211595212208
CDS207506207814
CDS207903207993
CDS208101208369
CDS208459208605
CDS208686209264
CDS209549209779
CDS209897210982
CDS211079211139
CDS211230211285
CDS211361211499
CDS211595212175

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03031.17NIF8961050

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004721phosphoprotein phosphatase activity
GO:0005515protein binding
GO:0005634nucleus

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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