PH01000470G0730's details annotation
1.Annotation
ICBR annotation: nucleolar matrix protein-related, putative, expressed
Blast result AT5G05210 : 2.60E-50
Blast annotation: Surfeit locus protein 6
2.Location
Scaffold: PH01000470
Strand: +
| Region | Start | End |
| gene | 604167 | 606280 |
| mRNA | 604167 | 606280 |
| exon | 604167 | 606280 |
| CDS | 604774 | 605676 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000537 | Ribosome eukaryotic translation initiation factor 3 complex, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04935.11 | SURF6 | 113 | 277 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.