PH01000472G0230's details annotation
1.Annotation
ICBR annotation: peptidase M50 family protein, putative, expressed
Blast result AT2G32480 : 4.00E-102
Blast annotation: ARABIDOPSIS SERIN PROTEASE
2.Location
Scaffold: PH01000472
Strand: -
| Region | Start | End |
| gene | 155326 | 157448 |
| mRNA | 155326 | 157448 |
| exon | 155326 | 157448 |
| CDS | 155994 | 157250 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000845 | iron-sulfur cluster assembly, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02163.21 | Peptidase_M50 | 62 | 398 |
| PF13180.5 | PDZ_2 | 172 | 251 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004222 | metalloendopeptidase activity |
| GO:0005515 | protein binding |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.