PH01000476G0030's details annotation
1.Annotation
ICBR annotation: ELMO/CED-12 family protein, putative, expressed
Blast result AT3G07700 : 0.00E+00
Blast annotation: Protein kinase superfamily protein
2.Location
Scaffold: PH01000476
Strand: -
| Region | Start | End |
| gene | 37758 | 45367 |
| mRNA | 37758 | 45367 |
| exon | 37758 | 37892 |
| exon | 37984 | 38040 |
| exon | 38192 | 38362 |
| exon | 39360 | 39451 |
| exon | 40010 | 40064 |
| exon | 41364 | 41457 |
| exon | 42123 | 42216 |
| exon | 42604 | 42691 |
| exon | 43102 | 43227 |
| exon | 43538 | 43681 |
| exon | 43944 | 45367 |
| CDS | 37764 | 37892 |
| CDS | 37984 | 38040 |
| CDS | 38192 | 38362 |
| CDS | 39360 | 39451 |
| CDS | 40010 | 40064 |
| CDS | 41364 | 41457 |
| CDS | 42123 | 42216 |
| CDS | 42604 | 42691 |
| CDS | 43102 | 43227 |
| CDS | 43538 | 43681 |
| CDS | 43944 | 44558 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03109.15 | ABC1 | 270 | 389 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.