Annotation of co-expression genes

PH01000477G0530's details annotation

1.Annotation

ICBR annotation: NAD dependent epimerase/dehydratase family protein, putative, expressed

Blast result AT1G09510 : 5.20E-78
Blast annotation: NAD(P)-binding Rossmann-fold superfamily protein

2.Location

Scaffold: PH01000477
Strand: +

RegionStartEnd
gene395479399643
mRNA395479399643
exon395479396035
exon396936397105
exon397401397592
exon398162398227
exon398498398660
exon398987399173
exon399478399643
CDS395975396035
CDS396936397105
CDS397401397592
CDS398162398227
CDS398498398660
CDS398987399173
CDS399478399622

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000394Endocytosis
Alanine,_aspartate_and_glutamate_metabolism
IMP biosynthetic process,
purine ribonucleotide biosynthetic process,
phosphatidylcholine metabolic process,
RLK-Pelle_RLCK-VI (from iTAK)
Ether_lipid_metabolism
coexpression networkCFinderM000588lipid catabolic process,
MYB Transcription_Regulator(from PlantTFDB)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01073.183Beta_HSD24116

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0044237cellular metabolic process
GO:0050662coenzyme binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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