PH01000478G0720's details annotation
1.Annotation
ICBR annotation: POLE2A - Putative DNA polymerase epsilon complex subunit, expressed
Blast result AT5G22110 : 1.00E-140
Blast annotation: DNA polymerase epsilon subunit B2
2.Location
Scaffold: PH01000478
Strand: +
| Region | Start | End |
| gene | 473025 | 479156 |
| mRNA | 473025 | 479156 |
| exon | 473025 | 473841 |
| exon | 473970 | 474150 |
| exon | 474828 | 474981 |
| exon | 475524 | 475634 |
| exon | 475719 | 475823 |
| exon | 475916 | 475996 |
| exon | 476059 | 476219 |
| exon | 476312 | 476406 |
| exon | 476741 | 476823 |
| exon | 477808 | 477918 |
| exon | 478133 | 479156 |
| CDS | 473670 | 473841 |
| CDS | 473970 | 474150 |
| CDS | 474828 | 474981 |
| CDS | 475524 | 475634 |
| CDS | 475719 | 475823 |
| CDS | 475916 | 475996 |
| CDS | 476059 | 476219 |
| CDS | 476312 | 476406 |
| CDS | 476741 | 476823 |
| CDS | 477808 | 477918 |
| CDS | 478133 | 478279 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12213.7 | Dpoe2NT | 8 | 72 |
| PF04042.15 | DNA_pol_E_B | 256 | 381 |
| PF04042.15 | DNA_pol_E_B | 382 | 427 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Purine metabolism | DNA polymerase epsilon subunit 2 [EC:2.7.7.7] | ko00230 | K02325 |
| Pyrimidine metabolism | DNA polymerase epsilon subunit 2 [EC:2.7.7.7] | ko00240 | K02325 |
| DNA replication | DNA polymerase epsilon subunit 2 [EC:2.7.7.7] | ko03030 | K02325 |
| Base excision repair | DNA polymerase epsilon subunit 2 [EC:2.7.7.7] | ko03410 | K02325 |
| Nucleotide excision repair | DNA polymerase epsilon subunit 2 [EC:2.7.7.7] | ko03420 | K02325 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003887 | DNA-directed DNA polymerase activity |
| GO:0005634 | nucleus |
| GO:0006260 | DNA replication |
| GO:0006261 | DNA-dependent DNA replication |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.