Annotation of co-expression genes

PH01000478G0920's details annotation

1.Annotation

ICBR annotation: expressed_protein

Blast result - : -
Blast annotation: -

2.Location

Scaffold: PH01000478
Strand: -

RegionStartEnd
gene591549593084
mRNA591549593084
exon591549592217
exon592295593084
CDS591954592217
CDS592295592513

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000067GT57 GlycosylTransferases
mitochondrial_respiratory_chain_complex_III
endoplasmic reticulum membrane,
methylation,
mitochondrial electron transport, ubiquinol to cytochrome c,
N-Glycan_biosynthesis
Oxidative_phosphorylation
nucleobase-containing compound metabolic process,
coexpression networkCFinderM000344signal peptidase complex,
Protein_export
methylation,
signal peptide processing,
nucleobase-containing compound metabolic process,
coexpression networkCFinderM000657vesicle docking involved in exocytosis,
Oxidative_phosphorylation
Endocytosis
nucleosome,
vesicle-mediated transport,
nucleosome assembly,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
nullnullnullnull

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
nullnull

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.