PH01000479G0330's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G73240 : 1.50E-46
Blast annotation: -
2.Location
Scaffold: PH01000479
Strand: -
| Region | Start | End |
| gene | 193705 | 199955 |
| mRNA | 193705 | 199955 |
| exon | 193705 | 193898 |
| exon | 194158 | 194219 |
| exon | 195164 | 195245 |
| exon | 195891 | 196244 |
| exon | 196394 | 196618 |
| exon | 197380 | 199955 |
| CDS | 193746 | 193898 |
| CDS | 194158 | 194219 |
| CDS | 195164 | 195245 |
| CDS | 195891 | 196244 |
| CDS | 196394 | 196618 |
| CDS | 197380 | 197838 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001544 | RLK-Pelle_LRR-VI-2 (from iTAK) NF-YC Transcription_Regulator(from PlantTFDB) nuclear pore, RNA_transport |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF09531.9 | Ndc1_Nup | 127 | 322 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.