PH01000481G0730's details annotation
1.Annotation
ICBR annotation: HOTHEAD precursor, putative, expressed
Blast result AT1G73050 : 7.10E-47
Blast annotation: Glucose-methanol-choline (GMC) oxidoreductase family protein
2.Location
Scaffold: PH01000481
Strand: +
| Region | Start | End |
| gene | 524939 | 528238 |
| mRNA | 524939 | 528238 |
| exon | 524939 | 525806 |
| exon | 525852 | 525900 |
| exon | 526021 | 526494 |
| exon | 526648 | 526933 |
| exon | 527950 | 528238 |
| CDS | 525759 | 525806 |
| CDS | 525852 | 525900 |
| CDS | 526021 | 526494 |
| CDS | 526648 | 526933 |
| CDS | 527950 | 528076 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000341 | exosome_(RNase_complex) COP9_signalosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00732.18 | GMC_oxred_N | 46 | 115 |
| PF05199.12 | GMC_oxred_C | 220 | 285 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.