PH01000481G0760's details annotation
1.Annotation
ICBR annotation: AMP-binding domain containing protein, expressed
Blast result AT3G21240 : 8.60E-54
Blast annotation: 4-coumarate:CoA ligase 2
2.Location
Scaffold: PH01000481
Strand: -
| Region | Start | End |
| gene | 546795 | 549032 |
| mRNA | 546795 | 549032 |
| exon | 546795 | 547264 |
| exon | 547468 | 547570 |
| exon | 547659 | 547872 |
| exon | 548126 | 549032 |
| CDS | 547121 | 547264 |
| CDS | 547468 | 547570 |
| CDS | 547659 | 547872 |
| CDS | 548126 | 548198 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000724 | HSF Transcription_Regulator(from PlantTFDB) metabolic process, sterol_24-C-methyltransferase_activity Steroid_biosynthesis protein kinase C-activating G-protein coupled receptor signaling pathway, steroid biosynthetic process, diacylglycerol kinase activity, NAD+ kinase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00501.27 | AMP-binding | 19 | 69 |
| PF13193.5 | AMP-binding_C | 78 | 153 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0008152 | metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.