PH01000482G0520's details annotation
1.Annotation
ICBR annotation: DSHCT domain containing protein, expressed
Blast result AT3G46960 : 1.60E-87
Blast annotation: RNA helicase, ATP-dependent, SK12/DOB1 protein
2.Location
Scaffold: PH01000482
Strand: +
| Region | Start | End |
| gene | 364512 | 367647 |
| mRNA | 364512 | 367647 |
| exon | 364512 | 365031 |
| exon | 365350 | 365810 |
| exon | 366582 | 366820 |
| exon | 366994 | 367120 |
| exon | 367205 | 367647 |
| CDS | 364773 | 365031 |
| CDS | 365350 | 365810 |
| CDS | 366582 | 366820 |
| CDS | 366994 | 367120 |
| CDS | 367205 | 367417 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08148.11 | DSHCT | 255 | 424 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005524 | ATP binding |
| GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.