Annotation of co-expression genes

PH01000482G0850's details annotation

1.Annotation

ICBR annotation: CESA3 - cellulose synthase, expressed

Blast result AT5G64740 : 0.00E+00
Blast annotation: cellulose synthase 6

2.Location

Scaffold: PH01000482
Strand: +

RegionStartEnd
gene659985665277
mRNA659985665277
exon659985660271
exon660381660528
exon660699660910
exon661002661106
exon661159661361
exon661774662040
exon662119662464
exon662551662688
exon662804662929
exon663029663241
exon663332663623
exon663715663911
exon663993664343
exon664431665277
CDS660191660271
CDS660381660528
CDS660699660910
CDS661002661106
CDS661159661361
CDS661774662040
CDS662119662464
CDS662551662688
CDS662804662929
CDS663029663241
CDS663332663623
CDS663715663911
CDS663993664343
CDS664431665015

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000805Sulfur_metabolism
cysteine biosynthetic process from serine,
peptide-methionine-(S)-S-oxide reductase activity,
cysteine synthase activity,
Cysteine_and_methionine_metabolism
cellulose biosynthetic process,
chaperone binding,
cellulose synthase (UDP-forming) activity,
coexpression networkCFinderM001652mRNA_cleavage_factor_complex
GT31 GlycosylTransferases
mRNA_polyadenylation
mRNA_binding
mRNA_surveillance_pathway
protein glycosylation,
cellulose biosynthetic process,
membrane,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF14569.5zf-UDP2980
PF03552.13Cellulose_synt3521079

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0016020membrane
GO:0016760cellulose synthase (UDP-forming) activity
GO:0030244cellulose biosynthetic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.