PH01000483G0230's details annotation
1.Annotation
ICBR annotation: ATCPSF30/CPSF30, putative, expressed
Blast result AT1G30460 : 3.80E-93
Blast annotation: cleavage and polyadenylation specificity factor 30
2.Location
Scaffold: PH01000483
Strand: -
| Region | Start | End |
| gene | 182829 | 190453 |
| mRNA | 182829 | 190453 |
| exon | 182829 | 184757 |
| exon | 185545 | 185631 |
| exon | 186448 | 186495 |
| exon | 186553 | 186630 |
| exon | 187295 | 187405 |
| exon | 187544 | 187706 |
| exon | 188771 | 189172 |
| exon | 189898 | 190453 |
| CDS | 183969 | 184757 |
| CDS | 185545 | 185631 |
| CDS | 186448 | 186495 |
| CDS | 186553 | 186630 |
| CDS | 187295 | 187405 |
| CDS | 187544 | 187706 |
| CDS | 188771 | 189172 |
| CDS | 189898 | 190052 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | C3H |
| Transcription_Regulator(from PlantTFDB) | C3H |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04146.14 | YTH | 185 | 338 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| mRNA surveillance pathway | cleavage and polyadenylation specificity factor subunit 4 | ko03015 | K14404 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.