PH01000483G0770's details annotation
1.Annotation
ICBR annotation: metal transporter Nramp6, putative, expressed
Blast result AT1G80830 : 3.00E-158
Blast annotation: natural resistance-associated macrophage protein 1
2.Location
Scaffold: PH01000483
Strand: +
| Region | Start | End |
| gene | 525384 | 530647 |
| mRNA | 525384 | 530647 |
| exon | 525384 | 525583 |
| exon | 525937 | 526015 |
| exon | 526513 | 526617 |
| exon | 526883 | 526992 |
| exon | 527269 | 527450 |
| exon | 527537 | 527606 |
| exon | 527859 | 528032 |
| exon | 528691 | 528795 |
| exon | 529601 | 529696 |
| exon | 529782 | 530647 |
| CDS | 525455 | 525583 |
| CDS | 525937 | 526015 |
| CDS | 526513 | 526617 |
| CDS | 526883 | 526992 |
| CDS | 527269 | 527450 |
| CDS | 527537 | 527606 |
| CDS | 527859 | 528032 |
| CDS | 528691 | 528795 |
| CDS | 529601 | 529696 |
| CDS | 529782 | 530135 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01566.17 | Nramp | 71 | 319 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005215 | transporter activity |
| GO:0006810 | transport |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.