PH01000484G0010's details annotation
1.Annotation
ICBR annotation: CSLA3 - cellulose synthase-like family A
Blast result AT5G03760 : 1.00E-158
Blast annotation: Nucleotide-diphospho-sugar transferases superfamily protein
2.Location
Scaffold: PH01000484
Strand: +
| Region | Start | End |
| gene | 8845 | 15897 |
| mRNA | 8845 | 15897 |
| exon | 8845 | 10705 |
| exon | 10806 | 10904 |
| exon | 11711 | 11963 |
| exon | 13011 | 13121 |
| exon | 13193 | 13329 |
| exon | 13432 | 13545 |
| exon | 13746 | 13945 |
| exon | 14035 | 14229 |
| exon | 14261 | 15897 |
| CDS | 10340 | 10705 |
| CDS | 10806 | 10904 |
| CDS | 11711 | 11963 |
| CDS | 13011 | 13121 |
| CDS | 13193 | 13329 |
| CDS | 13432 | 13545 |
| CDS | 13746 | 13945 |
| CDS | 14035 | 14229 |
| CDS | 14261 | 14294 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| GlycosylTransferases | GT2 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13641.5 | Glyco_tranf_2_3 | 110 | 344 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.