PH01000487G0320's details annotation
1.Annotation
ICBR annotation: gibberellin receptor GID1L2, putative, expressed
Blast result AT5G23530 : 9.20E-28
Blast annotation: carboxyesterase 18
2.Location
Scaffold: PH01000487
Strand: +
| Region | Start | End |
| gene | 218871 | 223782 |
| mRNA | 218871 | 223782 |
| exon | 218871 | 219082 |
| exon | 219325 | 219653 |
| exon | 221195 | 221273 |
| exon | 221522 | 221576 |
| exon | 223265 | 223357 |
| exon | 223571 | 223782 |
| CDS | 218990 | 219082 |
| CDS | 219325 | 219653 |
| CDS | 221195 | 221273 |
| CDS | 221522 | 221576 |
| CDS | 223265 | 223357 |
| CDS | 223571 | 223590 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001514 | transferase activity, transferring hexosyl groups, metabolic process, oligopeptide transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07859.12 | Abhydrolase_3 | 33 | 129 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0016787 | hydrolase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.