PH01000487G0610's details annotation
1.Annotation
ICBR annotation: AGAP007117-PA, putative, expressed
Blast result AT5G18420 : 5.50E-28
Blast annotation: -
2.Location
Scaffold: PH01000487
Strand: +
| Region | Start | End |
| gene | 424709 | 428931 |
| mRNA | 424709 | 428931 |
| exon | 424709 | 426665 |
| exon | 427957 | 428028 |
| exon | 428104 | 428177 |
| exon | 428279 | 428420 |
| exon | 428641 | 428931 |
| CDS | 426546 | 426665 |
| CDS | 427957 | 428028 |
| CDS | 428104 | 428177 |
| CDS | 428279 | 428420 |
| CDS | 428641 | 428736 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10155.8 | DUF2363 | 67 | 136 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.