PH01000488G0570's details annotation
1.Annotation
ICBR annotation: amine oxidase precursor, putative, expressed
Blast result AT4G12290 : 0.00E+00
Blast annotation: Copper amine oxidase family protein
2.Location
Scaffold: PH01000488
Strand: +
| Region | Start | End |
| gene | 495466 | 502399 |
| mRNA | 495466 | 502399 |
| exon | 495466 | 496903 |
| exon | 499081 | 499194 |
| exon | 500014 | 500324 |
| exon | 500723 | 500921 |
| exon | 501113 | 501210 |
| exon | 501304 | 502399 |
| CDS | 495542 | 496903 |
| CDS | 499081 | 499194 |
| CDS | 500014 | 500324 |
| CDS | 500723 | 500921 |
| CDS | 501113 | 501210 |
| CDS | 501304 | 501511 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02727.15 | Cu_amine_oxidN2 | 83 | 165 |
| PF02728.15 | Cu_amine_oxidN3 | 176 | 275 |
| PF01179.19 | Cu_amine_oxid | 309 | 746 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005507 | copper ion binding |
| GO:0008131 | primary amine oxidase activity |
| GO:0009308 | amine metabolic process |
| GO:0048038 | quinone binding |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.